Schedule:
| Game | Date | Away Team (Rank) | Away Score | Home Team (Rank) | Home Score | Game Status | Result | Margin |
|---|---|---|---|---|---|---|---|---|
| 1 | 2016-09-03 | Southern Illinois | 30 | Florida Atlantic | 38 | Final | W | 8 |
| 2 | 2016-09-10 | Florida Atlantic | 10 | Miami | 38 | Final | L | -28 |
| 3 | 2016-09-17 | Florida Atlantic | 7 | Kansas State | 63 | Final | L | -56 |
| 4 | 2016-09-24 | Ball State | 31 | Florida Atlantic | 27 | Final | L | -4 |
| 5 | 2016-10-01 | Florida Atlantic | 31 | Florida International | 33 | Final | L | -2 |
| 6 | 2016-10-09 | Charlotte | 28 | Florida Atlantic | 23 | Final | L | -5 |
| 7 | 2016-10-15 | Florida Atlantic | 21 | Marshall | 27 | Final | L | -6 |
| 8 | 2016-10-29 | Western Kentucky | 52 | Florida Atlantic | 3 | Final | L | -49 |
| 9 | 2016-11-05 | Florida Atlantic | 42 | Rice | 25 | Final | W | 17 |
| 10 | 2016-11-12 | UTEP | 31 | Florida Atlantic | 35 | Final | W | 4 |
| 11 | 2016-11-19 | Old Dominion | 42 | Florida Atlantic | 24 | Final | L | -18 |
| 12 | 2016-11-26 | Florida Atlantic | 56 | Middle Tennessee | 77 | Final | L | -21 |