Schedule:
| Game | Date | Away Team (Rank) | Away Score | Home Team (Rank) | Home Score | Game Status | Result | Margin |
|---|---|---|---|---|---|---|---|---|
| 1 | 2016-09-03 | Austin Peay | 17 | Troy | 57 | Final | W | 40 |
| 2 | 2016-09-10 | Troy (96) | 24 | Clemson (2) | 30 | Final | L | -6 |
| 3 | 2016-09-17 | Troy (96) | 37 | Southern Miss (86) | 31 | Final | W | 6 |
| 4 | 2016-09-24 | New Mexico State | 6 | Troy | 52 | Final | W | 46 |
| 5 | 2016-10-01 | Troy (22) | 34 | Idaho (107) | 13 | Final | W | 21 |
| 6 | 2016-10-15 | Georgia State (106) | 21 | Troy (19) | 31 | Final | W | 10 |
| 7 | 2016-10-20 | Troy (17) | 28 | South Alabama (94) | 21 | Final | W | 7 |
| 8 | 2016-11-05 | Massachusetts | 31 | Troy | 52 | Final | W | 21 |
| 9 | 2016-11-12 | Appalachian State | 24 | Troy | 28 | Final | W | 4 |
| 10 | 2016-11-17 | Arkansas State (83) | 35 | Troy (15) | 3 | Final | L | -32 |
| 11 | 2016-11-26 | Troy (33) | 40 | Texas State (151) | 7 | Final | W | 33 |
| 12 | 2016-12-03 | Troy | 24 | Georgia Southern | 28 | Final | L | -4 |
| 13 | 2016-12-23 | Ohio (79) | 23 | Troy (44) | 28 | Final | W | 5 |