Schedule:
| Game | Date | Away Team (Rank) | Away Score | Home Team (Rank) | Home Score | Game Status | Result | Margin |
|---|---|---|---|---|---|---|---|---|
| 1 | 2016-09-03 | Morehead State | 7 | James Madison | 80 | Final | L | -73 |
| 2 | 2016-09-10 | Virginia Military | 17 | Morehead State | 13 | Final | L | -4 |
| 3 | 2016-09-17 | Lincoln (PA) | 6 | Morehead State | 56 | Final | W | 50 |
| 4 | 2016-09-24 | Morehead State | 28 | Drake | 30 | Final | L | -2 |
| 5 | 2016-10-01 | Valparaiso | 26 | Morehead State | 29 | Final | W | 3 |
| 6 | 2016-10-08 | Morehead State | 27 | Dayton | 51 | Final | L | -24 |
| 7 | 2016-10-15 | Marist | 44 | Morehead State | 41 | Final/OT | L | -3 |
| 8 | 2016-10-22 | Jacksonville | 61 | Morehead State | 49 | Final | L | -12 |
| 9 | 2016-11-05 | Morehead State (238) | 54 | Butler (231) | 28 | Final | W | 26 |
| 10 | 2016-11-12 | Campbell (233) | 27 | Morehead State (236) | 21 | Final | L | -6 |
| 11 | 2016-11-19 | Morehead State (237) | 31 | Davidson (250) | 10 | Final | W | 21 |