Schedule:
| Game | Date | Away Team (Rank) | Away Score | Home Team (Rank) | Home Score | Game Status | Result | Margin |
|---|---|---|---|---|---|---|---|---|
| 1 | 2016-09-10 | Jacksonville | 7 | Liberty | 55 | Final | L | -48 |
| 2 | 2016-09-17 | Edward Waters | 7 | Jacksonville | 41 | Final | W | 34 |
| 3 | 2016-09-24 | Jacksonville | 24 | Stetson | 7 | Final | W | 17 |
| 4 | 2016-10-01 | Duquesne | 54 | Jacksonville | 35 | Final | L | -19 |
| 5 | 2016-10-08 | Campbell | 0 | Jacksonville | 0 | Canceled | - | - |
| 6 | 2016-10-15 | Dayton | 36 | Jacksonville | 16 | Final | L | -20 |
| 7 | 2016-10-22 | Jacksonville | 61 | Morehead State | 49 | Final | W | 12 |
| 8 | 2016-10-29 | Jacksonville (209) | 35 | Davidson (249) | 17 | Final | W | 18 |
| 9 | 2016-11-05 | Drake (226) | 31 | Jacksonville (200) | 27 | Final | L | -4 |
| 10 | 2016-11-12 | Jacksonville (215) | 39 | Valparaiso (240) | 42 | Final | L | -3 |
| 11 | 2016-11-19 | Marist (215) | 35 | Jacksonville (222) | 41 | Final | W | 6 |