Schedule:
| Game | Date | Away Team (Rank) | Away Score | Home Team (Rank) | Home Score | Game Status | Result | Margin |
|---|---|---|---|---|---|---|---|---|
| 1 | 2016-09-01 | North Dakota | 9 | Stony Brook | 13 | Final | W | 4 |
| 2 | 2016-09-10 | Stony Brook | 0 | Temple | 38 | Final | L | -38 |
| 3 | 2016-09-17 | Richmond | 14 | Stony Brook | 42 | Final | W | 28 |
| 4 | 2016-09-24 | Sacred Heart | 38 | Stony Brook | 10 | Final | L | -28 |
| 5 | 2016-10-08 | Stony Brook | 27 | Towson | 20 | Final | W | 7 |
| 6 | 2016-10-15 | Rhode Island | 3 | Stony Brook | 14 | Final | W | 11 |
| 7 | 2016-10-22 | Stony Brook | 28 | Delaware | 3 | Final | W | 25 |
| 8 | 2016-10-29 | Stony Brook | 14 | New Hampshire | 43 | Final | L | -29 |
| 9 | 2016-11-05 | William & Mary (190) | 14 | Stony Brook (158) | 9 | Final | L | -5 |
| 10 | 2016-11-12 | Maine (161) | 27 | Stony Brook (167) | 21 | Final | L | -6 |
| 11 | 2016-11-19 | Stony Brook (173) | 6 | Albany (157) | 13 | Final | L | -7 |